WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00025957 Gene Name  Cbr-mpz-1
Sequence Name  ? CBG03011 Organism  Caenorhabditis briggsae
Automated Description  Is predicted to encode a protein with the following domains: PDZ domain and PDZ superfamily. Is an ortholog of C. elegans mpz-1. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

3 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG03011a.1 CBG03011a.1   [unknown]
Transcript:CBG03011b.1 CBG03011b.1   [unknown]
Transcript:CBG03011c.1 CBG03011c.1   [unknown]
 

Other

3 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG03011c CBG03011c   [unknown]
CDS:CBG03011a CBG03011a   [unknown]
CDS:CBG03011b CBG03011b   [unknown]

0 RNAi Result

35 Allele

Public Name
WBVar00136027
WBVar00136028
WBVar00141817
WBVar00141818
WBVar00141819
WBVar00141821
WBVar00141822
WBVar00141823
WBVar00141820
WBVar00107987
WBVar00107986
WBVar00107985
WBVar00107984
WBVar00107983
WBVar00107982
WBVar00107981
WBVar00107980
WBVar00107979
WBVar00107978
WBVar00107977
WBVar00107990
WBVar00107998
WBVar00107997
WBVar00107996
WBVar00107995
WBVar00107994
WBVar00107993
WBVar00107992
WBVar00107991
WBVar00107989

0 Chromosome

0 Chromosome Location

1 Data Sets

Name URL
WormBaseAcedbConverter  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-mpz-1, ACGATGGACGGCTGAAACCTGGAGATCAAGTTCTAGAAGTAAATGGAACGTCGTTAAGAG, WBGene00025957   Expr1063159 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

0 GO Annotation

0 Homologues

0 Locations

0 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term