WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00028339 Gene Name  Cbr-kdin-1
Sequence Name  ? CBG05992 Organism  Caenorhabditis briggsae
Automated Description  Is predicted to encode a protein with the following domains: KAP family P-loop domain; Ankyrin repeat; Ankyrin repeats (many copies); Domain of unknown function DUF3447; Ankyrin repeat-containing domain superfamily; and Ankyrin repeats (3 copies). Is an ortholog of C. elegans kdin-1. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG05992b.1 CBG05992b.1   [unknown]
Transcript:CBG05992a.1 CBG05992a.1   [unknown]
 

Other

2 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG05992a CBG05992a   [unknown]
CDS:CBG05992b CBG05992b   [unknown]

0 RNAi Result

10 Allele

Public Name
WBVar00136451
WBVar00040864
WBVar00111194
WBVar00111195
WBVar00111192
WBVar00111193
WBVar00111198
WBVar00111199
WBVar00111196
WBVar00111197

0 Chromosome

0 Chromosome Location

1 Data Sets

Name URL
WormBaseAcedbConverter  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-tag-144, GACGTTCCATCGAACCGTCTCGACTCAATTCTCGATCGCTTCTACAAACTGAATCTGTGT, WBGene00028339   Expr1065119 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

0 GO Annotation

0 Homologues

0 Locations

0 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term