WormMine: Gene WBGene00040661

• WormBase Gene ID: WBGene00040661
• Gene Name: Cbr-atm-1
• Sequence Name: CBG22015
• Organism: Caenorhabditis briggsae
• Automated Description: Is affected by Cbr-htz-1 based on RNA-seq studies. Is predicted to encode a protein with the following domains: Serine/threonine-protein kinase ATM/Tel1; FATC domain; Protein kinase-like domain superfamily; Phosphatidylinositol 3-/4-kinase, catalytic domain; Phosphatidylinositol 3-/4-kinase, catalytic domain superfamily; and Phosphatidylinositol 3- and 4-kinase. Is an ortholog of C. elegans atm-1. In C. elegans, atm-1 is involved in response to ionizing radiation.
• Biotype: SO:0001217
• Genetic Position: :±

1 Organism

• Name: Caenorhabditis briggsae
• Taxon Id: 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID	Sequence Name	Length (nt)	Chromosome Location
Transcript:CBG22015.1	CBG22015.1		[unknown]

Other

1 CDSs

WormMine ID	Sequence Name	Length (nt)	Chromosome Location
CDS:CBG22015	CBG22015		[unknown]

0 RNAi Result

9 Allele

• WBVar00130943
• WBVar00130942
• WBVar00045229
• WBVar00130944
• WBVar00045219
• WBVar00130939
• WBVar00130941
• WBVar00045224
• WBVar00130940

0 Chromosome

0 Chromosome Location

1 Data Sets

• WormBaseAcedbConverter

0 Downstream Intergenic Region

1 Expression Clusters

Regulated By Treatment	Description	Algorithm	Primary Identifier
	Transcripts that showed significantly increased expression in Cbr-htz-1(gu167) comparing to in AF16.	DESeq2, FDR < 0.05.	WBPaper00059178:Cbr-htz-1(gu167)_upregulated

3 Expression Patterns

• Primary Identifier: Expr1067087
• Remark: Cbr-atm-1, ATCGAGAATGGACGATTGGCTGAGGATTGCACCAAGATTATGGAGAAGTTGAAGGAGAAT, WBGene00040661
• Pattern: Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012

• Primary Identifier: Expr1068612
• Remark: CBG22013, TGGAGAAGATACGGTGGATTTCATGGATTTCGGGCTGGCCGAATTTTATAAGCAGTTAAA, WBGene00040660
• Pattern: Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012

• Primary Identifier: Expr1066860
• Remark: CBG22011, CATTTAAAAATGTGTTGTCGCCAGCCAATCGATCATAATACCGTACCATGGATCCCCTAT, WBGene00040658
• Pattern: Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012

0 GO Annotation

0 Homologues

0 Locations

0 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term