WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00042381 Gene Name  Cbr-thoc-1
Sequence Name  ? CBG24217 Organism  Caenorhabditis briggsae
Automated Description  Is predicted to encode a protein with the following domains: THO complex subunit 1 transcription elongation factor and THO complex, subunit THOC1. Is an ortholog of C. elegans thoc-1. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG24217a.1 CBG24217a.1   [unknown]
Transcript:CBG24217b.1 CBG24217b.1   [unknown]
 

Other

2 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG24217a CBG24217a   [unknown]
CDS:CBG24217b CBG24217b   [unknown]

0 RNAi Result

14 Allele

Public Name
WBVar00133920
WBVar00133921
WBVar00133919
WBVar00133924
WBVar00133925
WBVar00038304
WBVar00133922
WBVar00133923
WBVar00133926
WBVar00010179
WBVar00010184
WBVar00010189
WBVar00010194
WBVar00010199

0 Chromosome

0 Chromosome Location

1 Data Sets

Name URL
WormBaseAcedbConverter  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-thoc-1, TGATGCACAAAGCCCCTGGATACGTGTCAAAAACCGAGCCAAAAGCGGATCCAACGACGA, WBGene00042381   Expr1063161 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

0 GO Annotation

0 Homologues

0 Locations

0 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term