WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00026996 Gene Name  CBG04286
Sequence Name  ? CBG04286 Organism  Caenorhabditis briggsae
Automated Description  Is predicted to encode a protein with the following domain: Transmembrane protein 272. Is an ortholog of C. elegans F41C3.8. In C. elegans, F41C3.8 is involved in defense response to Gram-negative bacterium and innate immune response. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG04286.1 CBG04286.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG04286 CBG04286   [unknown]

0 RNAi Result

10 Allele

Public Name
WBVar00031164
WBVar00031169
WBVar00031159
WBVar00003534
WBVar00003539
WBVar00003524
WBVar00003529
WBVar00003519
WBVar00003544
WBVar00003549

0 Chromosome

0 Chromosome Location

1 Data Sets

Name URL
WormBaseAcedbConverter  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
CBG04286, GCATCTATTTCCTGATTCCAACACCGCGAAGAACCGCCTATCGTAGACAACAGAGACAGT, WBGene00026996   Expr1057125 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

0 GO Annotation

0 Homologues

0 Locations

0 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term