WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00023924 Gene Name  Cbr-cpf-1
Sequence Name  ? CBG00548 Organism  Caenorhabditis briggsae
Automated Description  Is predicted to encode a protein with the following domains: CSTF1, dimerization domain superfamily; G-protein beta WD-40 repeat; WD40/YVTN repeat-like-containing domain superfamily; WD40 repeat; Cleavage stimulation factor subunit 1, dimerisation domain; WD domain, G-beta repeat; and WD40-repeat-containing domain superfamily. Is an ortholog of C. elegans cpf-1. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG00548.1 CBG00548.1   [unknown]
Transcript:CBG00548.2 CBG00548.2   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG00548 CBG00548   [unknown]

0 RNAi Result

5 Allele

Public Name
WBVar00141388
WBVar00141384
WBVar00141385
WBVar00141386
WBVar00141387

0 Chromosome

0 Chromosome Location

1 Data Sets

Name URL
WormBaseAcedbConverter  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-cpf-1, GGAAGTGACGATCATCGTGCGAGATTCTGGTATCGGAAACCGACTACAAATGATAATTAA, WBGene00023924   Expr1060751 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

0 GO Annotation

0 Homologues

0 Locations

0 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term