WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00036114 Gene Name  Cbr-tra-4
Sequence Name  ? CBG16041 Organism  Caenorhabditis briggsae
Automated Description  Is predicted to encode a protein with the following domains: Zinc finger C2H2 superfamily and Zinc finger C2H2-type. Is an ortholog of C. elegans tra-4. In C. elegans, tra-4 is involved in hermaphrodite somatic sex determination; negative regulation of vulval development; and regulation of gene expression. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG16041.1 CBG16041.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG16041 CBG16041   [unknown]

0 RNAi Result

5 Allele

Public Name
WBVar00138334
WBVar00138336
WBVar00138335
WBVar00138338
WBVar00138337

0 Chromosome

0 Chromosome Location

1 Data Sets

Name URL
WormBaseAcedbConverter  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-tra-4, TAATGACTCATGAACGCGTCCACACTGGAATCATCAAGTTTGAGTGCAAAGTGTGCGATT, WBGene00036114   Expr1060327 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

0 GO Annotation

0 Homologues

0 Locations

0 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term