WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00025203 Gene Name  CBG02071
Sequence Name  ? CBG02071 Organism  Caenorhabditis briggsae
Automated Description  Is predicted to encode a protein with the following domains: C2 domain and C2 domain superfamily. Is an ortholog of C. elegans F54G2.1. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

7 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG02071f.1 CBG02071f.1   [unknown]
Transcript:CBG02071g.1 CBG02071g.1   [unknown]
Transcript:CBG02071e.1 CBG02071e.1   [unknown]
Transcript:CBG02071d.1 CBG02071d.1   [unknown]
Transcript:CBG02071c.1 CBG02071c.1   [unknown]
Transcript:CBG02071b.1 CBG02071b.1   [unknown]
Transcript:CBG02071a.1 CBG02071a.1   [unknown]
 

Other

7 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG02071d CBG02071d   [unknown]
CDS:CBG02071e CBG02071e   [unknown]
CDS:CBG02071f CBG02071f   [unknown]
CDS:CBG02071g CBG02071g   [unknown]
CDS:CBG02071a CBG02071a   [unknown]
CDS:CBG02071b CBG02071b   [unknown]
CDS:CBG02071c CBG02071c   [unknown]

0 RNAi Result

38 Allele

Public Name
WBVar00106974
WBVar00106975
WBVar00106972
WBVar00106973
WBVar00106970
WBVar00106971
WBVar00106969
WBVar00106968
WBVar00106981
WBVar00106980
WBVar00106978
WBVar00106979
WBVar00106976
WBVar00106977
WBVar00054329
WBVar00054344
WBVar00054349
WBVar00054334
WBVar00054339
WBVar00054369
WBVar00054364
WBVar00054359
WBVar00054354
WBVar00054379
WBVar00054374
WBVar00022654
WBVar00022659
WBVar00022664
WBVar00022669
WBVar00022674

0 Chromosome

0 Chromosome Location

1 Data Sets

Name URL
WormBaseAcedbConverter  

0 Downstream Intergenic Region

0 Expression Clusters

3 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
CBG02069, AAAGCAGTTTAATAAGGCTCATCAGTTCATTCGAGAGCTGTCGGTCAGCCAGGCTGATCC, WBGene00025202   Expr1051361 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  
CBG02073, CAAGCAAATCATTGCGCTTGATTCAAACGGTCTCTCCGACCCATTCGTCGTTATCGAAAT, WBGene00025204   Expr1054788 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  
CBG02071, CAAGACGTCGCATTTCTAACGCACAACGTCTAGCAGACCTTGGAGATTTTATCAATACCA, WBGene00025203   Expr1065655 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

0 GO Annotation

0 Homologues

0 Locations

0 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term