WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00027215 Gene Name  Cbr-hot-1
Sequence Name  ? CBG04572 Organism  Caenorhabditis briggsae
Automated Description  Is predicted to encode a protein with the following domains: Caenorhabditis elegans ly-6-related and Caenorhabditis elegans ly-6-related protein. Is an ortholog of C. elegans hot-1. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG04572a.1 CBG04572a.1   [unknown]
Transcript:CBG04572b.1 CBG04572b.1   [unknown]
 

Other

2 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG04572b CBG04572b   [unknown]
CDS:CBG04572a CBG04572a   [unknown]

0 RNAi Result

15 Allele

Public Name
WBVar00003492
WBVar00003497
WBVar00003477
WBVar00003482
WBVar00003487
WBVar00003467
WBVar00003472
WBVar00003532
WBVar00003537
WBVar00003522
WBVar00003527
WBVar00003512
WBVar00003517
WBVar00003502
WBVar00003507

0 Chromosome

0 Chromosome Location

1 Data Sets

Name URL
WormBaseAcedbConverter  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-hot-1, AAGAATTATTCAAACTTGGCGGAGAATCAGCAGACGACTCGACAATCGACGTCTGCACAT, WBGene00027215   Expr1065695 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

0 GO Annotation

0 Homologues

0 Locations

0 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term