WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00028528 Gene Name  Cbr-tmed-1
Sequence Name  ? CBG06221 Organism  Caenorhabditis briggsae
Automated Description  Is predicted to encode a protein with the following domains: Transmembrane emp24 domain-containing protein; emp24/gp25L/p24 family/GOLD; GOLD domain; and GOLD domain superfamily. Is an ortholog of C. elegans tmed-1. In C. elegans, tmed-1 is involved in IRE1-mediated unfolded protein response. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG06221.1 CBG06221.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG06221 CBG06221   [unknown]

0 RNAi Result

2 Allele

Public Name
WBVar00111350
WBVar00111351

0 Chromosome

0 Chromosome Location

1 Data Sets

Name URL
WormBaseAcedbConverter  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
CBG06221, ACGCGCAAATGGAATCAAGAACAATCTGAACAAGGTCGAGTATCACCAGGCACTTCTCCG, WBGene00028528   Expr1054853 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

0 GO Annotation

0 Homologues

0 Locations

0 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term