WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00029840 Gene Name  Cbr-pigl-1
Sequence Name  ? CBG07954 Organism  Caenorhabditis briggsae
Automated Description  Is predicted to encode a protein with the following domains: GlcNAc-PI de-N-acetylase; Putative deacetylase LmbE-like domain superfamily; N-acetylglucosaminyl phosphatidylinositol deacetylase-related; and N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase. Is an ortholog of C. elegans pigl-1. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG07954.1 CBG07954.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG07954 CBG07954   [unknown]

0 RNAi Result

21 Allele

Public Name
WBVar00112911
WBVar00112910
WBVar00112909
WBVar00112908
WBVar00112907
WBVar00112906
WBVar00027754
WBVar00027774
WBVar00027759
WBVar00027779
WBVar00027764
WBVar00027769
WBVar00027739
WBVar00027709
WBVar00027744
WBVar00027714
WBVar00027749
WBVar00027719
WBVar00027724
WBVar00027729
WBVar00027734

0 Chromosome

0 Chromosome Location

1 Data Sets

Name URL
WormBaseAcedbConverter  

0 Downstream Intergenic Region

0 Expression Clusters

2 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
CBG07954, GTTCAAATCTTCGTTCTGGATTCAATTCCTCTGTGGAGAAAGTATATTGGAATGTGGGAT, WBGene00029840   Expr1063427 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  
CBG07955, GAAAACGGCGTTTGGCGATTCGATTCGATTGCCACAGAGCGCAAATTCACAGACATTTGA, WBGene00029841   Expr1065393 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

0 GO Annotation

0 Homologues

0 Locations

0 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term