WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00029680 Gene Name  Cbr-olrn-1
Sequence Name  ? CBG07722 Organism  Caenorhabditis briggsae
Automated Description  Is predicted to encode a protein with the following domains: Nucleoside 2-deoxyribosyltransferase-like and Nucleoside 2-deoxyribosyltransferase like. Is an ortholog of C. elegans olrn-1. In C. elegans, olrn-1 is involved in olfactory learning. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG07722a.1 CBG07722a.1   [unknown]
Transcript:CBG07722b.1 CBG07722b.1   [unknown]
 

Other

2 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG07722a CBG07722a   [unknown]
CDS:CBG07722b CBG07722b   [unknown]

0 RNAi Result

15 Allele

Public Name
WBVar00112765
WBVar00112764
WBVar00112763
WBVar00112762
WBVar00112768
WBVar00112767
WBVar00112766
WBVar00112758
WBVar00112757
WBVar00112756
WBVar00112755
WBVar00112759
WBVar00112761
WBVar00112760
WBVar00050619

0 Chromosome

0 Chromosome Location

1 Data Sets

Name URL
WormBaseAcedbConverter  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-olrn-1, CCATCACCACAAGAAATTCTTCTACTACATTCCATCAACAACCACCTTCCTCTCAGGAAT, WBGene00029680   Expr1067360 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

0 GO Annotation

0 Homologues

0 Locations

0 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term