WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00030845 Gene Name  Cbr-lin-48
Sequence Name  ? CBG09216 Organism  Caenorhabditis briggsae
Automated Description  Is predicted to encode a protein with the following domains: Zinc finger, C2H2 type; Ovo-like; Zinc finger C2H2-type; and Zinc finger C2H2 superfamily. Is an ortholog of C. elegans lin-48. In C. elegans, lin-48 is involved in anatomical structure morphogenesis and response to salt stress. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG09216.1 CBG09216.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG09216 CBG09216   [unknown]

0 RNAi Result

8 Allele

Public Name
WBVar00114668
WBVar00114667
WBVar00114666
WBVar00114665
WBVar00114669
WBVar00114671
WBVar00114670
WBVar00028724

0 Chromosome

0 Chromosome Location

1 Data Sets

Name URL
WormBaseAcedbConverter  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-lin-48, AAATTTGAAGTTTACCTGTCCCACATAAAGGCGGTCCATCCACTTTCAGCAGCTTATTTC, WBGene00030845   Expr1055999 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

0 GO Annotation

0 Homologues

0 Locations

0 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term