WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00031349 Gene Name  Cbr-ssq-2
Sequence Name  ? CBG09831 Organism  Caenorhabditis briggsae
Automated Description  Is an ortholog of C. elegans ssq-2. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

3 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG09831c.1 CBG09831c.1   [unknown]
Transcript:CBG09831b.1 CBG09831b.1   [unknown]
Transcript:CBG09831a.1 CBG09831a.1   [unknown]
 

Other

3 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG09831c CBG09831c   [unknown]
CDS:CBG09831a CBG09831a   [unknown]
CDS:CBG09831b CBG09831b   [unknown]

0 RNAi Result

6 Allele

Public Name
WBVar00115329
WBVar00115325
WBVar00115326
WBVar00115327
WBVar00115328
WBVar00115324

0 Chromosome

0 Chromosome Location

1 Data Sets

Name URL
WormBaseAcedbConverter  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-ssq-2, AAGAGGAGCTTCCACTATGACAGCTGTTGGAGGAGCCCCAGCAGGAGGACCAAGCACCAT, WBGene00031349   Expr1066420 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

0 GO Annotation

0 Homologues

0 Locations

0 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term