WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00032334 Gene Name  Cbr-aff-1
Sequence Name  ? CBG11169 Organism  Caenorhabditis briggsae
Automated Description  Is predicted to encode a protein with the following domains: Cell-cell fusogen EFF/AFF, domain 3; Type I membrane glycoproteins cell-cell fusogen; and Cell-cell fusogen EFF/AFF. Is an ortholog of C. elegans aff-1. In C. elegans, aff-1 is involved in regulation of egg-laying behavior and syncytium formation by plasma membrane fusion. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG11169.1 CBG11169.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG11169 CBG11169   [unknown]

0 RNAi Result

3 Allele

Public Name
WBVar00012847
WBVar00012857
WBVar00012852

0 Chromosome

0 Chromosome Location

1 Data Sets

Name URL
WormBaseAcedbConverter  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-aff-1, GAATCCATATTGTCATAGCTGTTGGGCTACTGTTCCTTCTTATCATTCTCTTCACAAAAT, WBGene00032334   Expr1059600 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

0 GO Annotation

0 Homologues

0 Locations

0 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term