WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00037008 Gene Name  Cbr-aco-1
Sequence Name  ? CBG17361 Organism  Caenorhabditis briggsae
Automated Description  Is predicted to encode a protein with the following domains: Aconitase C-terminal domain; Aconitase A/isopropylmalate dehydratase small subunit, swivel domain; Aconitase family (aconitate hydratase); Aconitase/Iron-responsive element-binding protein 2; Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3; Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain; Aconitase/3-isopropylmalate dehydratase, swivel; and Aconitase, iron-sulfur domain. Is an ortholog of C. elegans aco-1. In C. elegans, aco-1 is involved in tricarboxylic acid metabolic process. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG17361.1 CBG17361.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG17361 CBG17361   [unknown]

0 RNAi Result

4 Allele

Public Name
WBVar00012869
WBVar00012864
WBVar00125297
WBVar00125298

0 Chromosome

0 Chromosome Location

1 Data Sets

Name URL
WormBaseAcedbConverter  

0 Downstream Intergenic Region

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  C.briggsae proteins that showed significantly increased at L4 larva stage than in emrbyo. Benjamin and Hochberg corrected p-value < 0.05. WBPaper00051425:CB_L4_vs_embryo_upregulated

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-aco-1, CTCACCTACTACCGTAACGGAGGAATCCTTCAATACATGATCAGAAAGCTGATCCAGTAA, WBGene00037008   Expr1060507 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

0 GO Annotation

0 Homologues

0 Locations

0 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term