WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00039527 Gene Name  Cbr-txt-5
Sequence Name  ? CBG20569 Organism  Caenorhabditis briggsae
Automated Description  Is predicted to encode a protein with the following domains: Laminin-type EGF domain and Laminin EGF domain. Is an ortholog of C. elegans txt-5. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG20569.1 CBG20569.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG20569 CBG20569   [unknown]

0 RNAi Result

6 Allele

Public Name
WBVar00128825
WBVar00128824
WBVar00128823
WBVar00128822
WBVar00128821
WBVar00128820

0 Chromosome

0 Chromosome Location

1 Data Sets

Name URL
WormBaseAcedbConverter  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
CBG20569, CATTTGTGATGTTGGTTTTGAAGGCGACTATTGTGATAAGATTATTTGCGTTTATGGAAC, WBGene00039527   Expr1060371 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

0 GO Annotation

0 Homologues

0 Locations

0 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term