WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00036686 Gene Name  Cbr-sdpn-1
Sequence Name  ? CBG16865 Organism  Caenorhabditis briggsae
Automated Description  Is predicted to encode a protein with the following domains: Fes/CIP4, and EFC/F-BAR homology domain; FCH domain; SH3-like domain superfamily; SH3 domain; and AH/BAR domain superfamily. Is an ortholog of C. elegans sdpn-1. In C. elegans, sdpn-1 is involved in endocytic recycling. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG16865.1 CBG16865.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG16865 CBG16865   [unknown]

0 RNAi Result

1 Allele

Public Name
WBVar00021622

0 Chromosome

0 Chromosome Location

1 Data Sets

Name URL
WormBaseAcedbConverter  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-sdpn-1, GAAGGAGATGAGATTGGGCTCAGAAAGGGTGAGACGATAGAGGTGCTCACCGAGCCAGAC, WBGene00036686   Expr1052379 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

0 GO Annotation

0 Homologues

0 Locations

0 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term