WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00030164 Gene Name  Cbr-acs-4
Sequence Name  ? CBG08359 Organism  Caenorhabditis briggsae
Automated Description  Is predicted to encode a protein with the following domains: AMP-binding enzyme, C-terminal domain; AMP-binding enzyme; AMP-dependent synthetase/ligase; and AMP-binding enzyme C-terminal domain. Is an ortholog of C. elegans acs-4. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG08359.1 CBG08359.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG08359 CBG08359   [unknown]

0 RNAi Result

1 Allele

Public Name
WBVar00113524

0 Chromosome

0 Chromosome Location

1 Data Sets

Name URL
WormBaseAcedbConverter  

0 Downstream Intergenic Region

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  C.briggsae proteins that showed significantly decreased at L4 larva stage than in emrbyo. Benjamin and Hochberg corrected p-value < 0.05. WBPaper00051425:CB_L4_vs_embryo_downregulated

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
CBG08359, GTAAACTATCGCGCACCGAAATTCCTGCTGCAATCCATCTTTGTCCCGATATCTGGACAC, WBGene00030164   Expr1067296 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

0 GO Annotation

0 Homologues

0 Locations

0 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term