WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00032404 Gene Name  Cbr-lmd-3
Sequence Name  ? CBG11250 Organism  Caenorhabditis briggsae
Automated Description  Is predicted to encode a protein with the following domains: TLD; LysM domain; LysM domain superfamily; and TLDc domain. Is an ortholog of C. elegans lmd-3. In C. elegans, lmd-3 is involved in determination of adult lifespan; response to heat; and response to oxidative stress. Biotype  SO:0001217
Genetic Position 
Quick Links:
 
Quick Links:
 

1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

3 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG11250c.1 CBG11250c.1   [unknown]
Transcript:CBG11250a.1 CBG11250a.1   [unknown]
Transcript:CBG11250b.1 CBG11250b.1   [unknown]
 

Other

3 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG11250c CBG11250c   [unknown]
CDS:CBG11250b CBG11250b   [unknown]
CDS:CBG11250a CBG11250a   [unknown]

0 RNAi Result

29 Allele

Public Name
WBVar00116726
WBVar00116727
WBVar00116728
WBVar00116729
WBVar00116722
WBVar00116723
WBVar00116724
WBVar00116725
WBVar00116730
WBVar00116731
WBVar00116732
WBVar00116715
WBVar00116716
WBVar00116717
WBVar00116718
WBVar00116711
WBVar00116712
WBVar00116713
WBVar00116714
WBVar00116719
WBVar00116720
WBVar00116721
WBVar00116704
WBVar00116705
WBVar00116706
WBVar00116707
WBVar00116708
WBVar00116709
WBVar00116710

0 Chromosome

0 Chromosome Location

1 Data Sets

Name URL
WormBaseAcedbConverter  

0 Downstream Intergenic Region

0 Expression Clusters

2 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
CBG11251, TCAAGAAGAAGGCGGCGAAGCCGATGAGAACAAGATCCAAGTCACTAGGAGCACCGTATG, WBGene00032405   Expr1060067 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  
CBG11250, GAGAGGCCAAGGAGTTTTTCGGAACTGGATACGCCATCAGAAGGCAAGAATATCGGAAGG, WBGene00032404   Expr1056890 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

0 GO Annotation

0 Homologues

0 Locations

0 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term