WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00032318 Gene Name  Cbr-agr-1
Sequence Name  ? CBG11147 Organism  Caenorhabditis briggsae
Automated Description  Is predicted to encode a protein with the following domains: EGF-like domain; Follistatin-like, N-terminal; Laminin EGF domain; Laminin-type EGF domain; Kazal domain superfamily; Kazal domain; and Kazal-type serine protease inhibitor domain. Is an ortholog of C. elegans agr-1. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

3 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG11147a.1 CBG11147a.1   [unknown]
Transcript:CBG11147b.1 CBG11147b.1   [unknown]
Transcript:CBG11147c.1 CBG11147c.1   [unknown]
 

Other

3 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG11147c CBG11147c   [unknown]
CDS:CBG11147b CBG11147b   [unknown]
CDS:CBG11147a CBG11147a   [unknown]

0 RNAi Result

54 Allele

Public Name
WBVar00116616
WBVar00116617
WBVar00116618
WBVar00116619
WBVar00116612
WBVar00116613
WBVar00116614
WBVar00116615
WBVar00116620
WBVar00116621
WBVar00116622
WBVar00116605
WBVar00116606
WBVar00116607
WBVar00116608
WBVar00116601
WBVar00116602
WBVar00116603
WBVar00116604
WBVar00116609
WBVar00116610
WBVar00116611
WBVar00116623
WBVar00116624
WBVar00116625
WBVar00116600
WBVar00116579
WBVar00116580
WBVar00116581
WBVar00116586

0 Chromosome

0 Chromosome Location

1 Data Sets

Name URL
WormBaseAcedbConverter  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-agr-1, GAAGTGTGAATGTAGAAACGGAGCTCTTGGTGACAAGTGTAACCTATGTCCCAATGGTTT, WBGene00032318   Expr1065571 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

0 GO Annotation

0 Homologues

0 Locations

0 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term