WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00036366 Gene Name  Cbr-toca-1
Sequence Name  ? CBG16426 Organism  Caenorhabditis briggsae
Automated Description  Is predicted to encode a protein with the following domains: Fes/CIP4, and EFC/F-BAR homology domain; AH/BAR domain superfamily; SH3-like domain superfamily; SH3 domain; and FCH domain. Is an ortholog of C. elegans toca-1. In C. elegans, toca-1 is involved in several processes, including negative regulation of protein localization to adherens junction; positive regulation of egg-laying behavior; and regulation of cellular component organization. Biotype  SO:0001217
Genetic Position 
Quick Links:
 
Quick Links:
 

1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG16426.1 CBG16426.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG16426 CBG16426   [unknown]

0 RNAi Result

1 Allele

Public Name
WBVar00013354

0 Chromosome

0 Chromosome Location

1 Data Sets

Name URL
WormBaseAcedbConverter  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-toca-1, AAAACAACTCTGCTGATGGCTTCGTTCCTAGCTCCTACTTGAAAACGACGTGGTACAAAT, WBGene00036366   Expr1057747 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

0 GO Annotation

0 Homologues

0 Locations

0 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term