WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00039258 Gene Name  Cbr-mec-15
Sequence Name  ? CBG20219 Organism  Caenorhabditis briggsae
Automated Description  Is predicted to encode a protein with the following domains: F-box-like; WD40-repeat-containing domain superfamily; WD40/YVTN repeat-like-containing domain superfamily; WD domain, G-beta repeat; WD40 repeat; F-box-like domain superfamily; and F-box domain. Is an ortholog of C. elegans mec-15. In C. elegans, mec-15 is involved in several processes, including positive regulation of GABAergic synaptic transmission; positive regulation of multicellular organismal process; and response to mechanical stimulus. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG20219.1 CBG20219.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG20219 CBG20219   [unknown]

0 RNAi Result

3 Allele

Public Name
WBVar00019944
WBVar00019939
WBVar00128300

0 Chromosome

0 Chromosome Location

1 Data Sets

Name URL
WormBaseAcedbConverter  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
CBG20219, GCCAAGGATGAGACCGCCCATTTGGGATGGATTTGGAATATGGCGAGGGACGACACTACG, WBGene00039258   Expr1067875 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

0 GO Annotation

0 Homologues

0 Locations

0 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term