WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00038913 Gene Name  Cbr-sol-2
Sequence Name  ? CBG19743 Organism  Caenorhabditis briggsae
Automated Description  Is predicted to encode a protein with the following domains: CUB domain and Spermadhesin, CUB domain superfamily. Is an ortholog of C. elegans sol-2. In C. elegans, sol-2 is involved in several processes, including hyperosmotic response; positive regulation of glutamatergic synaptic transmission; and thigmotaxis. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG19743.1 CBG19743.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG19743 CBG19743   [unknown]

0 RNAi Result

3 Allele

Public Name
WBVar00027692
WBVar00027697
WBVar00027687

0 Chromosome

0 Chromosome Location

1 Data Sets

Name URL
WormBaseAcedbConverter  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
CBG19743, GTCAAGTGCAAATCGGATTGTGGTCAGATTGGTGACACAGGAGGGACCAGCTAGTTCAAT, WBGene00038913   Expr1063542 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

0 GO Annotation

0 Homologues

0 Locations

0 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term