WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00223971 Gene Name  Bma-taf-5
Sequence Name  ? Bm3710 Organism  Brugia malayi
Automated Description  Is predicted to encode a protein with the following domains: G-protein beta WD-40 repeat; Transcription initiation factor TFIID subunit 5; WD40/YVTN repeat-like-containing domain superfamily; WD40 associated region in TFIID subunit, NTD2 domain; TFIID subunit TAF5, NTD2 domain; WD40 repeat; TFIID subunit TAF5, NTD2 domain superfamily; WD domain, G-beta repeat; and WD40-repeat-containing domain superfamily. Is an ortholog of C. elegans taf-5. In C. elegans, taf-5 is involved in embryo development and transcription by RNA polymerase II. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Brugia malayi 6279

0 Synonyms

Genomics

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:Bm3710.1 Bm3710.1   [unknown]
Transcript:Bm3710.2 Bm3710.2   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Bm3710 Bm3710   [unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

1 Data Sets

Name URL
WormBaseAcedbConverter  

0 Downstream Intergenic Region

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly higher expression in L3 larva comparing to in adult. edgeR v3.28. FDR < 0.05, fold change > 2. WBPaper00061765:L3_vs_Adult_Upregulated
  Transcripts that showed significantly higher expression in L4 larva comparing to in adult. edgeR v3.28. FDR < 0.05, fold change > 2. WBPaper00061765:L4_vs_Adult_Upregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

0 Locations

0 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term