WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00025288 Gene Name  Cbr-blmp-1
Sequence Name  ? CBG02201 Organism  Caenorhabditis briggsae
Automated Description  Is predicted to encode a protein with the following domains: SET domain; Zinc finger, C2H2 type; Zinc finger C2H2-type; and Zinc finger C2H2 superfamily. Is an ortholog of C. elegans blmp-1. In C. elegans, blmp-1 is involved in negative regulation of distal tip cell migration; regulation of developmental process; and regulation of transcription by RNA polymerase II. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

4 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG02201a.1 CBG02201a.1   [unknown]
Transcript:CBG02201a.2 CBG02201a.2   [unknown]
Transcript:CBG02201b.1 CBG02201b.1   [unknown]
Transcript:CBG02201b.2 CBG02201b.2   [unknown]
 

Other

2 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG02201b CBG02201b   [unknown]
CDS:CBG02201a CBG02201a   [unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

1 Data Sets

Name URL
WormBaseAcedbConverter  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-blmp-1, GCGACGTTTGCGATGCCAAGTTCACTCAATACGTTCATCTGAGACTTCACAAAAGATTGC, WBGene00025288   Expr1056023 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

0 GO Annotation

0 Homologues

0 Locations

0 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term