WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00058532 Gene Name  Cre-syg-2
Sequence Name  ? CRE15300 Organism  Caenorhabditis remanei
Automated Description  Is predicted to encode a protein with the following domains: Immunoglobulin I-set domain; Immunoglobulin; Immunoglobulin I-set; Immunoglobulin subtype; Fibronectin type III; Immunoglobulin-like fold; Immunoglobulin domain; CD80-like C2-set immunoglobulin domain; CD80-like, immunoglobulin C2-set; Immunoglobulin subtype 2; Fibronectin type III domain; Immunoglobulin-like domain superfamily; and Fibronectin type III superfamily. Is an ortholog of C. elegans syg-2. In C. elegans, syg-2 is involved in cell-cell signaling; nervous system development; and protein localization to synapse. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Caenorhabditis remanei 31234

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CRE15300.1 CRE15300.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CRE15300 CRE15300   [unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

1 Data Sets

Name URL
WormBaseAcedbConverter  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cre-syg-2, ACTGAAATGGCGAGAACAGCAATTAACGGCGGCGACGTGCGGCAAGTTCAAATGTACGGA, WBGene00058532   Expr1099351 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

0 GO Annotation

0 Homologues

0 Locations

0 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term