WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00032952 Gene Name  Cbr-sol-1
Sequence Name  ? CBG11922 Organism  Caenorhabditis briggsae
Automated Description  Is predicted to encode a protein with the following domains: CUB domain and Spermadhesin, CUB domain superfamily. Is an ortholog of C. elegans sol-1. In C. elegans, sol-1 is involved in several processes, including hyperosmotic response; positive regulation of glutamatergic synaptic transmission; and thigmotaxis. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

3 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG11922c.1 CBG11922c.1   [unknown]
Transcript:CBG11922b.1 CBG11922b.1   [unknown]
Transcript:CBG11922a.1 CBG11922a.1   [unknown]
 

Other

3 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG11922c CBG11922c   [unknown]
CDS:CBG11922b CBG11922b   [unknown]
CDS:CBG11922a CBG11922a   [unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

1 Data Sets

Name URL
WormBaseAcedbConverter  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-sol-1, AACGAACGACATCTTCGATGCAACTGGATTCTATGCTCATTATCAGTTTATCACTCAAGA, WBGene00032952   Expr1065009 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

0 GO Annotation

0 Homologues

0 Locations

0 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term