WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00028023 Gene Name  CBG05609
Sequence Name  ? CBG05609 Organism  Caenorhabditis briggsae
Automated Description  Is predicted to encode a protein with the following domains: Tapt1 family and Eukaryotic membrane protein family. Is an ortholog of C. elegans F26F2.7. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

4 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG05609a.1 CBG05609a.1   [unknown]
Transcript:CBG05609c.1 CBG05609c.1   [unknown]
Transcript:CBG05609b.1 CBG05609b.1   [unknown]
Transcript:CBG05609d.1 CBG05609d.1   [unknown]
 

Other

4 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG05609c CBG05609c   [unknown]
CDS:CBG05609b CBG05609b   [unknown]
CDS:CBG05609d CBG05609d   [unknown]
CDS:CBG05609a CBG05609a   [unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

1 Data Sets

Name URL
WormBaseAcedbConverter  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
CBG05609, ATTATGATCATTCGAGTGTTGAGTCAGACGTTTACACTCGATAATTGGGGATCGATTATT, WBGene00028023   Expr1054148 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

0 GO Annotation

0 Homologues

0 Locations

0 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term