WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00120166 Gene Name  CJA00962
Sequence Name  ? CJA00962 Organism  Caenorhabditis japonica
Automated Description  Is predicted to encode a protein with the following domains: FATC domain; Phosphatidylinositol 3-/4-kinase, catalytic domain superfamily; Phosphatidylinositol 3-/4-kinase, catalytic domain; Protein kinase-like domain superfamily; and Phosphatidylinositol 3- and 4-kinase. Is an ortholog of C. elegans atl-1. In C. elegans, atl-1 is involved in DNA damage checkpoint signaling; embryo development; and meiotic chromosome segregation. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis japonica 281687

0 Synonyms

Genomics

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CJA00962b.1 CJA00962b.1   [unknown]
Transcript:CJA00962a.1 CJA00962a.1   [unknown]
 

Other

2 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CJA00962a CJA00962a   [unknown]
CDS:CJA00962b CJA00962b   [unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

1 Data Sets

Name URL
WormBaseAcedbConverter  

0 Downstream Intergenic Region

0 Expression Clusters

3 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
CJA22754, GTCAGCGGAACCGCATTTGTACCATACTCCAGAAAATGCCAATTTGCAATTCGGAACTGG, WBGene00178326   Expr1072252 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  
CJA00962, AATCACGTGTTGCAAGCAAGAGCGGTAGAACGTATGATGTCGTTGTGGTTGAGTAACACA, WBGene00120166   Expr1089816 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  
Cjp-atl-1, TTTGGAACGAGTTGACGATAATGGACAGGTGATTGAATGCATATGGAACCGACTAAAGTA, WBGene00124463   Expr1076051 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

0 GO Annotation

0 Homologues

0 Locations

0 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term