WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00123635 Gene Name  CJA04431
Sequence Name  ? CJA04431 Organism  Caenorhabditis japonica
Automated Description  Is predicted to encode a protein with the following domains: 7TM GPCR, serpentine receptor class r (Str) and Serpentine type 7TM GPCR chemoreceptor Str. Is an ortholog of C. elegans str-187; str-188; and str-190. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Caenorhabditis japonica 281687

0 Synonyms

Genomics

3 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CJA04431b.1 CJA04431b.1   [unknown]
Transcript:CJA04431a.1 CJA04431a.1   [unknown]
Transcript:CJA04431c.1 CJA04431c.1   [unknown]
 

Other

3 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CJA04431b CJA04431b   [unknown]
CDS:CJA04431c CJA04431c   [unknown]
CDS:CJA04431a CJA04431a   [unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

1 Data Sets

Name URL
WormBaseAcedbConverter  

0 Downstream Intergenic Region

0 Expression Clusters

2 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
CJA04431, ATACATCCGACCCTGCGAAACAAGAAAATCGTCATGTTAATTCGGTAGCACACTCTTCGA, WBGene00123635   Expr1084254 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  
CJA04934, GGCAAGCGATTCACATTCGGTTGGAAATTCTACATACTCTTCGCCATCCCGTTGTGTTAT, WBGene00124138   Expr1074892 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

0 GO Annotation

0 Homologues

0 Locations

0 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term