WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00125949 Gene Name  Cjp-swsn-1
Sequence Name  ? CJA06745 Organism  Caenorhabditis japonica
Automated Description  Is predicted to encode a protein with the following domains: SMARCC, SWIRM-associated domain; SANT/Myb domain; SWI/SNF complex subunit SMARCC1; Myb-like DNA-binding domain; SWIRM-associated domain at the C-terminal; SWIRM-associated region 1; Winged helix-like DNA-binding domain superfamily; SWIRM domain; Homeobox-like domain superfamily; and SMARCC, C-terminal. Is an ortholog of C. elegans swsn-1. In C. elegans, swsn-1 is involved in several processes, including determination of adult lifespan; negative regulation of vulval development; and positive regulation of growth rate. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Caenorhabditis japonica 281687

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CJA06745.1 CJA06745.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CJA06745 CJA06745   [unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

1 Data Sets

Name URL
WormBaseAcedbConverter  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cjp-psa-1, CGTTCCATATGGATCAGCTCAAGTATCTTGAAAACCGAGCCAAGCACGAAGCGCATACCA, WBGene00125949   Expr1073694 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

0 GO Annotation

0 Homologues

0 Locations

0 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term