WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00135556 Gene Name  CJA16352
Sequence Name  ? CJA16352 Organism  Caenorhabditis japonica
Automated Description  Is predicted to encode a protein with the following domains: Sterile alpha motif/pointed domain superfamily; Uncharacterized protein C19orf47-like; Sterile alpha motif domain; and SAM domain (Sterile alpha motif). Is an ortholog of C. elegans F53F8.5. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Caenorhabditis japonica 281687

0 Synonyms

Genomics

3 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CJA16352b.1 CJA16352b.1   [unknown]
Transcript:CJA16352a.1 CJA16352a.1   [unknown]
Transcript:CJA16352c.1 CJA16352c.1   [unknown]
 

Other

3 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CJA16352c CJA16352c   [unknown]
CDS:CJA16352a CJA16352a   [unknown]
CDS:CJA16352b CJA16352b   [unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

1 Data Sets

Name URL
WormBaseAcedbConverter  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
CJA16352, GAATCCAATATTCGGACTCCTCGCGCCGCCAGAATTCGTCCGGACAAAGTGTTCATAGTC, WBGene00135556   Expr1087116 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

0 GO Annotation

0 Homologues

0 Locations

0 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term