WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00039508 Gene Name  Cbr-tam-1
Sequence Name  ? CBG20546 Organism  Caenorhabditis briggsae
Automated Description  Is predicted to encode a protein with the following domains: RING-type zinc-finger, LisH dimerisation motif; Zinc finger, RING-type; and RING-type zinc-finger. Is an ortholog of C. elegans tam-1. In C. elegans, tam-1 is involved in chromosome segregation; negative regulation of vulval development; and transcription initiation-coupled chromatin remodeling. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

4 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG20546b.1 CBG20546b.1   [unknown]
Transcript:CBG20546c.1 CBG20546c.1   [unknown]
Transcript:CBG20546a.1 CBG20546a.1   [unknown]
Transcript:CBG20546d.1 CBG20546d.1   [unknown]
 

Other

4 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG20546a CBG20546a   [unknown]
CDS:CBG20546b CBG20546b   [unknown]
CDS:CBG20546c CBG20546c   [unknown]
CDS:CBG20546d CBG20546d   [unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

1 Data Sets

Name URL
WormBaseAcedbConverter  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-tam-1, TGGTGGAAAAGAAGGCGTTGACTTCAGATGACGTTCGGCAGATGAAGCAGAAGATCAACG, WBGene00039508   Expr1067513 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

0 GO Annotation

0 Homologues

0 Locations

0 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term