WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00034710 Gene Name  Cbr-lsy-2
Sequence Name  ? CBG14093 Organism  Caenorhabditis briggsae
Automated Description  Is predicted to encode a protein with the following domains: Zinc finger, C2H2 type; Zinc finger C2H2-type; and Zinc finger C2H2 superfamily. Is an ortholog of C. elegans lsy-2. In C. elegans, lsy-2 is involved in nematode larval development; neuron fate specification; and positive regulation of gene expression. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

4 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG14093b.1 CBG14093b.1   [unknown]
Transcript:CBG14093a.2 CBG14093a.2   [unknown]
Transcript:CBG14093a.3 CBG14093a.3   [unknown]
Transcript:CBG14093a.1 CBG14093a.1   [unknown]
 

Other

2 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG14093b CBG14093b   [unknown]
CDS:CBG14093a CBG14093a   [unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

1 Data Sets

Name URL
WormBaseAcedbConverter  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-lsy-2, AGCTACAATCAACACATGGAGTACCATGCCAAAGTCGCCAACCTTATTGACACTGGAGCA, WBGene00034710   Expr1059009 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

0 GO Annotation

0 Homologues

0 Locations

0 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term