WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00260147 Gene Name  SRAE_1000353000
Sequence Name  ? SRAE_1000353000 Organism  Strongyloides ratti
Automated Description  Is predicted to encode a protein with the following domains: ANL, N-terminal domain; AMP-binding enzyme; and AMP-dependent synthetase/ligase. Is an ortholog of C. elegans acs-17. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Strongyloides ratti 34506

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:SRAE_1000353000.1 SRAE_1000353000.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:SRAE_1000353000 SRAE_1000353000   [unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

1 Data Sets

Name URL
WormBaseAcedbConverter  

0 Downstream Intergenic Region

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
parasitic vs free-living. Transcripts that showed significantly increased expression at infective third-stage larva stage, comparing to free living female stage. Differentially expressed genes in all pairwise comparisons (parasitic vs. free-living; parasitic vs. iL3; and iL3 vs. free-living) were determined for S.ratti and S.stercoralis using the R (version 3.1.2) package edgeR version 3.6.8. Genes with less than one count per million reads were excluded. Genes were considered to be differentially expressed if the false discovery rate (FDR) was <= 0.001 and the fold change was >= 2. WBPaper00050919:up_infective-L3_vs_free-living_mRNA
parasitic vs free-living. Transcripts that showed significantly increased expression at infective third-stage larva stage, comparing to parasitic female stage (collected from S. ratti-infected rats). Differentially expressed genes in all pairwise comparisons (parasitic vs. free-living; parasitic vs. iL3; and iL3 vs. free-living) were determined for S.ratti and S.stercoralis using the R (version 3.1.2) package edgeR version 3.6.8. Genes with less than one count per million reads were excluded. Genes were considered to be differentially expressed if the false discovery rate (FDR) was <= 0.001 and the fold change was >= 2. WBPaper00050919:up_infective-L3_vs_parasitic_mRNA

0 Expression Patterns

0 GO Annotation

0 Homologues

0 Locations

0 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term