WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00266919 Gene Name  SRAE_X000135100
Sequence Name  ? SRAE_X000135100 Organism  Strongyloides ratti
Automated Description  Is predicted to encode a protein with the following domains: Mitochondrial substrate/solute carrier; Mitochondrial carrier protein; and Mitochondrial carrier domain superfamily. Is an ortholog of C. elegans dif-1. In C. elegans, dif-1 is involved in mitochondrial transport. Biotype  SO:0001217
Genetic Position 
Quick Links:
 
Quick Links:
 

1 Organism

Name Taxon Id
Strongyloides ratti 34506

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:SRAE_X000135100.1 SRAE_X000135100.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:SRAE_X000135100 SRAE_X000135100   [unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

1 Data Sets

Name URL
WormBaseAcedbConverter  

0 Downstream Intergenic Region

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
parasitic vs free-living. Transcripts that showed significantly decreased expression at infective third-stage larva stage, comparing to free living female stage. Differentially expressed genes in all pairwise comparisons (parasitic vs. free-living; parasitic vs. iL3; and iL3 vs. free-living) were determined for S.ratti and S.stercoralis using the R (version 3.1.2) package edgeR version 3.6.8. Genes with less than one count per million reads were excluded. Genes were considered to be differentially expressed if the false discovery rate (FDR) was <= 0.001 and the fold change was >= 2. WBPaper00050919:down_infective-L3_vs_free-living_mRNA

0 Expression Patterns

0 GO Annotation

0 Homologues

0 Locations

0 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term