WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00222027 Gene Name  Bma-hpo-28
Sequence Name  ? Bm1766 Organism  Brugia malayi
Automated Description  Is predicted to encode a protein with the following domains: MSP (Major sperm protein) domain; Major sperm protein (MSP) domain; Immunoglobulin-like fold; and PapD-like superfamily. Is an ortholog of C. elegans hpo-28. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Brugia malayi 6279

0 Synonyms

Genomics

4 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:Bm1766a.1 Bm1766a.1   [unknown]
Transcript:Bm1766c.1 Bm1766c.1   [unknown]
Transcript:Bm1766b.1 Bm1766b.1   [unknown]
Transcript:Bm1766d.1 Bm1766d.1   [unknown]
 

Other

4 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Bm1766b Bm1766b   [unknown]
CDS:Bm1766a Bm1766a   [unknown]
CDS:Bm1766d Bm1766d   [unknown]
CDS:Bm1766c Bm1766c   [unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

1 Data Sets

Name URL
WormBaseAcedbConverter  

0 Downstream Intergenic Region

3 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly lower expression in L3 larva comparing to in adult. edgeR v3.28. FDR < 0.05, fold change > 2. WBPaper00061765:L3_vs_Adult_Downregulated
  Transcripts that showed significantly higher expression in adult comparing to in microfilariae. edgeR v3.28. FDR < 0.05, fold change > 2. WBPaper00061765:Adult_vs_Micro_Upregulated
  Transcripts that showed significantly lower expression in L4 larva comparing to in adult. edgeR v3.28. FDR < 0.05, fold change > 2. WBPaper00061765:L4_vs_Adult_Downregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

0 Locations

0 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term