WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00273980 Gene Name  PPA35611
Sequence Name  ? PPA35611 Organism  Pristionchus pacificus
Automated Description  Is predicted to encode a protein with the following domains: Type I membrane glycoproteins cell-cell fusogen; Cell-cell fusogen EFF/AFF; and Cell-cell fusogen EFF/AFF, domain 3. Is an ortholog of C. elegans C26D10.7 and eff-1. In C. elegans, eff-1 is involved in several processes, including anatomical structure morphogenesis; egg-laying behavior; and nematode pharyngeal muscle development. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Pristionchus pacificus 54126

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:PPA35611.1 PPA35611.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:PPA35611 PPA35611   [unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

1 Data Sets

Name URL
WormBaseAcedbConverter  

0 Downstream Intergenic Region

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Differentially expressed genes between eud-1(tu1069) and PS312. Fold change > 2 and p-value < 0.05. WBPaper00061743:ppa-eud-1(tu1069)_regulated
  Transcripts that showed significantly decreased expression in Ppa-sul-2(tu1069) animals comparing to in wild type PS312 animals at 4M1 stage. DESeq244(version 1.18.1) with two criteria, P-value < 0.05 and Fold change > 2. WBPaper00064862:Ppa-sul-2(tu1069)_4M1_Down

0 Expression Patterns

0 GO Annotation

0 Homologues

0 Locations

0 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term