WormMine: Gene WBGene00273194

• WormBase Gene ID: WBGene00273194
• Gene Name: PPA34825
• Sequence Name: PPA34825
• Organism: Pristionchus pacificus
• Automated Description: Is predicted to encode a protein with the following domains: Ankyrin repeats (3 copies); EGF-like domain; Domain of unknown function DUF3447; WD40-repeat-containing domain superfamily; WD40/YVTN repeat-like-containing domain superfamily; Notch-like domain superfamily; Ankyrin repeat; Ankyrin repeat-containing domain superfamily; LNR domain; and Notch domain.
• Biotype: SO:0001217
• Genetic Position: :±

1 Organism

• Name: Pristionchus pacificus
• Taxon Id: 54126

0 Synonyms

Genomics

1 Transcripts

WormMine ID	Sequence Name	Length (nt)	Chromosome Location
Transcript:PPA34825.1	PPA34825.1		[unknown]

Other

1 CDSs

WormMine ID	Sequence Name	Length (nt)	Chromosome Location
CDS:PPA34825	PPA34825		[unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

1 Data Sets

• WormBaseAcedbConverter

0 Downstream Intergenic Region

2 Expression Clusters

Regulated By Treatment	Description	Algorithm	Primary Identifier
Germline ablation	Genes that showed differential expression in the comparision of germline-ablated animals fed on E. coli OP50 versus un-ablated animals fed E. coli OP50.	Differential expression was calculated by empirical Bayes method using the eBayes function, and control of FDR was employed as the multiple testing correction. Authors used cutoff of absolute log2 fold change greater than or equal to 1.5 AND p_value less than or equal to 0.05 to call differentially expressed genes.	WBPaper00041466:PP_germline-ablation_regulated
Bacteria infection: Xenorhabdus nematophila	Pristionchus pacificus Genes with expression levels changed significantly after treatment of Xenorhabdus nematophila.	Differential expression were calculated by empirical eBayes method using eBayes function. P_value <= 0.01 and log2 fold change > 1 were used to call differentially expressed genes in all datasets.	WBPaper00041606:PP_X.nematophila_regulated

0 Expression Patterns

0 GO Annotation

0 Homologues

0 Locations

0 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term