WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00122565 Gene Name  Cjp-pnc-2
Sequence Name  ? CJA03361 Organism  Caenorhabditis japonica
Automated Description  Is predicted to encode a protein with the following domains: LDL receptor-like superfamily; PAN-like domain; Low-density lipoprotein receptor domain class A; Low-density lipoprotein (LDL) receptor class A repeat; and PAN-3 domain. Is an ortholog of C. elegans pnc-2. In C. elegans, pnc-2 is involved in nicotinamide metabolic process. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis japonica 281687

0 Synonyms

Genomics

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CJA03361b.1 CJA03361b.1   [unknown]
Transcript:CJA03361a.1 CJA03361a.1   [unknown]
 

Other

2 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CJA03361b CJA03361b   [unknown]
CDS:CJA03361a CJA03361a   [unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

1 Data Sets

Name URL
WormBaseAcedbConverter  

0 Downstream Intergenic Region

0 Expression Clusters

3 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cjp-pnc-2, GAAAATGGACGAGGCGAACAAGATGTTTCAGAAGAGGGGCGTGGCTATCATTGACGACAA, WBGene00126388   Expr1084002 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  
CJA16911, AACGATGCCGTGTTAAGTGGACTGGAAAGCGAAGAAGAGCGGTGGTTTGCCACAAGTAAC, WBGene00136115   Expr1076656 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  
CJA03361, ACTCGATGTGCCCCAACTCGACGTACACTGACCGCGCCTACTGCGCCGCCCTGGTACTCA, WBGene00122565   Expr1081991 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

0 GO Annotation

0 Homologues

0 Locations

0 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term