WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00025799 Gene Name  Cbr-flp-16
Sequence Name  ? CBG02820 Organism  Caenorhabditis briggsae
Automated Description  Is an ortholog of C. elegans flp-16. In C. elegans, flp-16 is involved in cellular response to carbon dioxide; negative regulation of nematode pharyngeal pumping; and negative regulation of striated muscle contraction. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG02820b.1 CBG02820b.1   [unknown]
Transcript:CBG02820a.1 CBG02820a.1   [unknown]
 

Other

2 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG02820b CBG02820b   [unknown]
CDS:CBG02820a CBG02820a   [unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

1 Data Sets

Name URL
WormBaseAcedbConverter  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-flp-16, AAAAAGAGCACAGACGTTCGTGAGATTTGGAAAGCGAGGACAGACTTTTGTACGATTCGG, WBGene00025799   Expr1058063 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

0 GO Annotation

0 Homologues

0 Locations

0 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term