WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00028961 Gene Name  Cbr-somi-1
Sequence Name  ? CBG06725 Organism  Caenorhabditis briggsae
Automated Description  Is predicted to encode a protein with the following domain: C2H2-type zinc-finger domain. Is an ortholog of C. elegans somi-1. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

4 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG06725a.1 CBG06725a.1   [unknown]
Transcript:CBG06725d.1 CBG06725d.1   [unknown]
Transcript:CBG06725c.1 CBG06725c.1   [unknown]
Transcript:CBG06725b.1 CBG06725b.1   [unknown]
 

Other

4 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG06725c CBG06725c   [unknown]
CDS:CBG06725b CBG06725b   [unknown]
CDS:CBG06725a CBG06725a   [unknown]
CDS:CBG06725d CBG06725d   [unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

1 Data Sets

Name URL
WormBaseAcedbConverter  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-somi-1, GGAGATCGGTTACAAGAGAGACTAGCAGCGCACAAGGCAAACTCATCCAGAGGGCGGAAG, WBGene00028961   Expr1058252 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

0 GO Annotation

0 Homologues

0 Locations

0 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term