WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00134606 Gene Name  Cjp-alp-1
Sequence Name  ? CJA15402 Organism  Caenorhabditis japonica
Automated Description  Is predicted to encode a protein with the following domains: LIM domain and Zinc finger, LIM-type. Is an ortholog of C. elegans alp-1. In C. elegans, alp-1 is involved in determination of adult lifespan and nematode pharyngeal pumping. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Caenorhabditis japonica 281687

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CJA15402.1 CJA15402.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CJA15402 CJA15402   [unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

1 Data Sets

Name URL
WormBaseAcedbConverter  

0 Downstream Intergenic Region

0 Expression Clusters

3 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cjp-alp-1, GATAGTGGCGGCGTTGAATGAGAGATTACAAGGTACATTATTACTCTCTATCTCGTTTTA, WBGene00134606   Expr1071897 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  
CJA22277, GCAAATCGGCCGCCGAGCAGTACGTTCAACAGACGCAAGGATTTGTTGAGAATCAGGGGT, WBGene00177849   Expr1074148 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  
CJA20190, TTCGGTTCCAAAGCCACCACCATTACAAGATTGCTCAGATCAAGCTGAAGACTCGCGCAA, WBGene00175762   Expr1079061 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

0 GO Annotation

0 Homologues

0 Locations

0 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term