WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Expression Pattern :

Pattern  Expression in the alimentary canal: Strong and consistent expression in anterior arcades, posterior arcades, pharyngeal epithelium, pm4, pm8, g1, g2, vir, K.a/K' cells. inx-11 is more strongly expressed in the most posterior (int 9) intestinal cell. Weak or rare expression in pm1, pm2, pm3, pm5, pm6, pm7. Expression in the nervous system: CEPsh, DVC, LUA. Expression in the reproductive system: In adult stage, expressed in utse. In developing larva stage, expressed in uterus, sperm (spermatocytes, spermatids). Expression of inx-11 appears in pharyngeal tissue around two-fold stage, and by three-fold stage, strong expression becomes restricted to g1, g2, pm4, and pm8. inx-11 is expressed in the hypodermal cells of the animal in postembryonic stages. Primary Identifier  Expr8679
Remark  Picture: Fig 3.

31 Anatomy Terms

Definition Name Synonym Primary Identifier
A chain of very large cuboidal cells forming a wide central lumen in which food arrives from the posterior pharynx, is digested, and from which waste products proceed to the rectum. Intestinal rings form in groups of two and four cells surrounding the common lumen; thus the epithelium is only one cell deep at any point, with neighboring cells firmly secured to their neighbors by apical adherens junctions. These cells have very large nuclei and many large vacuoles, yolk granules, and other inclusions; the latter increase in number and electron density as the animal ages. intestine gut WBbt:0005772
The organ in which the eggs are developed and protected until laid. uterus   WBbt:0006760
cell that makes up epithelium in pharynx. pharyngeal epithelial cell pharyngeal epithelium WBbt:0005459
first layer pharyngeal muscle cell. pm1 M1 WBbt:0003744
membranous cell attaches the uterus to the lateral epidermis (seam) and forms a thin laminar process dorsal to the vulva. formed by fusion of eight pi cell progeny and AC. uterine seam cell utse WBbt:0006789
seventh pharyngeal muscle cell layer pm7 m7 WBbt:0003721
Intestino-rectal valve virL lineage name: ABprpappppp WBbt:0004511
Intestino-rectal valve virR lineage name: ABprpappppa WBbt:0004510
A cell which gives rise to spermatids by meiosis. spermatocyte   WBbt:0006799
Interface between pharynx and hypodermis, form anterior part of the buccal cavity. anterior arcade cell arc ant WBbt:0005794
Interface between pharynx and hypodermis, form anterior part of the buccal cavity. posterior arcade cell arc post WBbt:0005795
third pharyngeal muscle cell layer pm3 M3 WBbt:0003740
eighth pharyngeal muscle cell layer (single cell) pm8 lineage name: MSaaapapp WBbt:0004302
fifth pharyngeal muscle cell layer pm5 M5 WBbt:0003737
fourth pharyngeal muscle cell layer pm4 M4 WBbt:0003739
sixth pharyngeal muscle cell layer pm6 m6 WBbt:0003724
Neuron class of one ring interneuron, cell body in dorsorectal ganglion. DVC lineage name: Caapaa WBbt:0004821
Cephalic sheath, sheet-like processes envelop meuropil of the ring and part of ventral ganglion CEPshDL lineage name: ABarpaaaapp WBbt:0004929
Cephalic sheath, sheet-like processes envelop meuropil of the ring and part of ventral ganglion CEPshDR lineage name: ABarpaaapap WBbt:0004927
Cephalic sheath, sheet-like processes envelop meuropil of the ring and part of ventral ganglion CEPshVL lineage name: ABplpaaapap WBbt:0004925
Cephalic sheath, sheet-like processes envelop meuropil of the ring and part of ventral ganglion CEPshVR lineage name: ABprpaaapap WBbt:0004923
An immature sperm cell which undergoes morphogenesis to form mature, amoeboid sperm. spermatid   WBbt:0006800
second layer pharyngeal muscle cell. pm2 m2 WBbt:0003742
Interneuron, short process in posterior ventral cord LUAL lineage name: ABplpppaapap WBbt:0004493
Interneuron, short process in posterior ventral cord LUAR lineage name: ABprpppaapap WBbt:0004491
Rectal cell K' cell lineage name: ABplpapppap WBbt:0004497
Pharyngeal gland cell 1P, before fusion into g1ARP. g1P lineage name: MSaaaaapap WBbt:0004528
Pharyngeal gland cell 2L. g2L lineage name: MSaapapaa WBbt:0004526
Pharyngeal gland cell 2R. g2R lineage name: MSpapapaa WBbt:0004524
Pharyngeal gland cell 1AR, before fusion into g1ARP. g1AR lineage name: MSpapaapaa WBbt:0004530

1 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00002133 inx-11 W04D2.3 Caenorhabditis elegans

5 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The stage that begins when a C.elegans individual is fully-developed and has reached maturity. adult Ce WBls:0000041
  The C. elegans life stage spanning 620-800min(hatch) after first cleavage at 20 Centigrade. Cell number remains at ~560 cells, with some new cells generated and some cells go through programmed cell death. A stage after elongation is over. The last stage of embryogenesis. Also called pre-hatched embryo, late embryo or morphogenetic embryo. fully-elongated embryo Ce WBls:0000021
  A developmental life stage of the nematode Caenorhabditis elegans that occurs from egg hatching until adulthood. larva Ce WBls:0000023
  The C. elegans life stage spanning 520-620min after first cleavage at 20 Centigrade. Cell number remains at ~560 cells, with some new cells generated and some cells go through programmed cell death. The shape of embryo is elongated and tripple fold. A stage between 2-fold embryo and fully-elongated embryo. Also called pretzel embryo or pretzel stage. 3-fold embryo Ce WBls:0000020
  The C. elegans life stage spanning 460-520min after first cleavage at 20 Centigrade. Cell number remains at ~560 cells, with some new cells generated and some cells go through programmed cell death. The shape of embryo is elongated and double fold. A stage between 1.5-fold embryo and 3-fold embryo. 2-fold embryo Ce WBls:0000019