WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  All available microarray datasets for the GPL200 platform (Affymetrix C. elegans Genome Array) were obtained from the GEO repository. This included 2243 individual microarray experiments. These were normalized against each other with the software RMAexpress (Bolstad, 2014). Based on these normalized values, Pearsons correlation coefficients were obtained for each probe-probe pair of the 22,620 probes represented on this array type. The resulting list of correlation coefficients was then ranked to generate the ranked coexpression database with information on each probe represented on the GPL200 platform. Description  Coexpression clique No. 149, C16A11.5-C16C8.13, on the genome-wide coexpression clique map for the nematode GPL200 platform.
Primary Identifier  WBPaper00061527:C16A11.5-C16C8.13

0 Anatomy Terms

46 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001046 dnj-28 Y54E10BL.4 Caenorhabditis elegans
WBGene00003119 mac-1 Y48C3A.7 Caenorhabditis elegans
WBGene00004028 pif-1 Y18H1A.6 Caenorhabditis elegans
WBGene00006375 syp-1 F26D2.2 Caenorhabditis elegans
WBGene00008003 enu-3.2 C38D4.1 Caenorhabditis elegans
WBGene00008236 C50F4.12 C50F4.12 Caenorhabditis elegans
WBGene00008995 prde-1 F21A3.5 Caenorhabditis elegans
WBGene00010362 enu-3.1 H04D03.1 Caenorhabditis elegans
WBGene00011225 R10H10.7 R10H10.7 Caenorhabditis elegans
WBGene00012074 T27A8.2 T27A8.2 Caenorhabditis elegans
WBGene00012543 nkcc-1 Y37A1C.1 Caenorhabditis elegans
WBGene00015111 B0281.4 B0281.4 Caenorhabditis elegans
WBGene00015818 C16A11.5 C16A11.5 Caenorhabditis elegans
WBGene00019011 F57C9.4 F57C9.4 Caenorhabditis elegans
WBGene00019878 R05D3.3 R05D3.3 Caenorhabditis elegans
WBGene00020742 T23H2.3 T23H2.3 Caenorhabditis elegans
WBGene00021201 Y17G9B.4 Y17G9B.4 Caenorhabditis elegans
WBGene00021338 Y34F4.3 Y34F4.3 Caenorhabditis elegans
WBGene00022225 Y73B3B.3 Y73B3B.3 Caenorhabditis elegans
WBGene00020087 R119.1 R119.1 Caenorhabditis elegans
WBGene00021037 fbxa-203 W05F2.5 Caenorhabditis elegans
WBGene00012954 fbxa-217 Y47H9C.11 Caenorhabditis elegans
WBGene00014917 fbxa-122 Y53C10A.13 Caenorhabditis elegans
WBGene00012368 fbxa-93 W09G3.5 Caenorhabditis elegans
WBGene00018666 bath-6 F52C6.9 Caenorhabditis elegans
WBGene00018667 bath-7 F52C6.10 Caenorhabditis elegans
WBGene00019138 bath-21 F59H6.8 Caenorhabditis elegans
WBGene00019140 bath-3 F59H6.10 Caenorhabditis elegans
WBGene00019132 bath-19 F59H6.1 Caenorhabditis elegans
WBGene00015013 btb-3 B0047.2 Caenorhabditis elegans

0 Life Stages

0 Processes

0 Regulated By Gene

0 Regulated By Molecule