WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  All available microarray datasets for the GPL200 platform (Affymetrix C. elegans Genome Array) were obtained from the GEO repository. This included 2243 individual microarray experiments. These were normalized against each other with the software RMAexpress (Bolstad, 2014). Based on these normalized values, Pearsons correlation coefficients were obtained for each probe-probe pair of the 22,620 probes represented on this array type. The resulting list of correlation coefficients was then ranked to generate the ranked coexpression database with information on each probe represented on the GPL200 platform. Description  Coexpression clique No. 275, F57F4.2-scl-11, on the genome-wide coexpression clique map for the nematode GPL200 platform.
Primary Identifier  WBPaper00061527:F57F4.2-scl-11

0 Anatomy Terms

22 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001734 grl-25 ZK643.8 Caenorhabditis elegans
WBGene00006419 oac-39 R02C2.3 Caenorhabditis elegans
WBGene00007535 ttr-19 C12D8.4 Caenorhabditis elegans
WBGene00009001 tyr-3 F21C3.2 Caenorhabditis elegans
WBGene00009892 scl-11 F49E11.6 Caenorhabditis elegans
WBGene00011157 chil-15 R09D1.1 Caenorhabditis elegans
WBGene00012521 Y32B12B.1 Y32B12B.1 Caenorhabditis elegans
WBGene00015071 cest-30 B0238.7 Caenorhabditis elegans
WBGene00015700 asp-9 C11D2.2 Caenorhabditis elegans
WBGene00016092 cyp-33B1 C25E10.2 Caenorhabditis elegans
WBGene00019178 scl-12 H10D18.2 Caenorhabditis elegans
WBGene00019179 scl-13 H10D18.4 Caenorhabditis elegans
WBGene00019202 H14N18.2 H14N18.2 Caenorhabditis elegans
WBGene00020832 T26C12.2 T26C12.2 Caenorhabditis elegans
WBGene00004996 spp-11 T25D10.3 Caenorhabditis elegans
WBGene00044518 fipr-25 T06A1.7 Caenorhabditis elegans
WBGene00017465 F14F9.2 F14F9.2 Caenorhabditis elegans
WBGene00019016 F57F4.2 F57F4.2 Caenorhabditis elegans
WBGene00021964 Y57E12B.4 Y57E12B.4 Caenorhabditis elegans
WBGene00011245 R11D1.4 R11D1.4 Caenorhabditis elegans
WBGene00008059 C41G6.13 C41G6.13 Caenorhabditis elegans
WBGene00013351 Y59A8B.19 Y59A8B.19 Caenorhabditis elegans

0 Life Stages

0 Processes

0 Regulated By Gene

0 Regulated By Molecule