WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  All available microarray datasets for the GPL200 platform (Affymetrix C. elegans Genome Array) were obtained from the GEO repository. This included 2243 individual microarray experiments. These were normalized against each other with the software RMAexpress (Bolstad, 2014). Based on these normalized values, Pearsons correlation coefficients were obtained for each probe-probe pair of the 22,620 probes represented on this array type. The resulting list of correlation coefficients was then ranked to generate the ranked coexpression database with information on each probe represented on the GPL200 platform. Description  Coexpression clique No. 132, pro-3_11683-C44E4.1_9745, on the genome-wide coexpression clique map for the nematode GPL200 platform.
Primary Identifier  WBPaper00061527:pro-3_11683-C44E4.1_9745

0 Anatomy Terms

62 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00002230 klp-20 Y50D7A.6 Caenorhabditis elegans
WBGene00002244 laf-1 Y71H2AM.19 Caenorhabditis elegans
WBGene00003779 nob-1 Y75B8A.2 Caenorhabditis elegans
WBGene00004217 ptr-2 C32E8.8 Caenorhabditis elegans
WBGene00004367 ric-8 Y69A2AR.2 Caenorhabditis elegans
WBGene00004947 sos-1 T28F12.3 Caenorhabditis elegans
WBGene00006503 snx-3 W06D4.5 Caenorhabditis elegans
WBGene00006739 ulp-4 C41C4.6 Caenorhabditis elegans
WBGene00006769 unc-33 Y37E11C.1 Caenorhabditis elegans
WBGene00006770 unc-34 Y50D4C.1 Caenorhabditis elegans
WBGene00007057 ant-1.2 W02D3.6 Caenorhabditis elegans
WBGene00007859 mrps-31 C32A3.2 Caenorhabditis elegans
WBGene00008530 F02E9.5 F02E9.5 Caenorhabditis elegans
WBGene00008676 oac-15 F11A5.8 Caenorhabditis elegans
WBGene00009314 phm-2 F32B4.4 Caenorhabditis elegans
WBGene00012155 VW02B12L.2 VW02B12L.2 Caenorhabditis elegans
WBGene00012600 Y38E10A.22 Y38E10A.22 Caenorhabditis elegans
WBGene00012644 rabx-5 Y39A1A.5 Caenorhabditis elegans
WBGene00012663 hex-3 Y39A1C.4 Caenorhabditis elegans
WBGene00012676 pro-3 Y39B6A.14 Caenorhabditis elegans
WBGene00012718 dhhc-8 Y39E4B.7 Caenorhabditis elegans
WBGene00012929 rsks-1 Y47D3A.16 Caenorhabditis elegans
WBGene00012934 gly-9 Y47D3A.23 Caenorhabditis elegans
WBGene00013160 cmtr-1 Y53F4B.13 Caenorhabditis elegans
WBGene00013732 aakg-1 Y111B2A.8 Caenorhabditis elegans
WBGene00013790 Y116A8C.10 Y116A8C.10 Caenorhabditis elegans
WBGene00015406 C03H5.4 C03H5.4 Caenorhabditis elegans
WBGene00015472 C05D9.3 C05D9.3 Caenorhabditis elegans
WBGene00016458 C35E7.6 C35E7.6 Caenorhabditis elegans
WBGene00016650 ubr-4 C44E4.1 Caenorhabditis elegans

0 Life Stages

0 Processes

0 Regulated By Gene

0 Regulated By Molecule