WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  Differentially expressed genes were estimated using a General Linear Model approach, negative binomial distribution, and a quasi-likelihood F-test. Genes with a P-value < 0.05 and fold change > 1 were considered significant. Description  Transcripts that showed significantly decreased expression in H3.3 null mutant animals (FAS43 [his-69&his-70(uge44) III; his-72(tm2066) III; his-74(uge18) V; his-71(ok2289) X]) comparing to in N2 animals at embryo stage.
Primary Identifier  WBPaper00054191:H3.3(null)_embryo_downregulated
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0 Anatomy Terms

14 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000725 col-152 F32G8.5 Caenorhabditis elegans
WBGene00001945 his-71 F45E1.6 Caenorhabditis elegans
WBGene00001946 his-72 Y49E10.6 Caenorhabditis elegans
WBGene00002016 hsp-16.2 Y46H3A.3 Caenorhabditis elegans
WBGene00002018 hsp-16.41 Y46H3A.2 Caenorhabditis elegans
WBGene00002026 hsp-70 C12C8.1 Caenorhabditis elegans
WBGene00004131 tent-5 F55A12.9 Caenorhabditis elegans
WBGene00009691 F44E5.4 F44E5.4 Caenorhabditis elegans
WBGene00009692 F44E5.5 F44E5.5 Caenorhabditis elegans
WBGene00014196 ZK1053.1 ZK1053.1 Caenorhabditis elegans
WBGene00016250 hsp-110 C30C11.4 Caenorhabditis elegans
WBGene00017681 slc-17.5 F21F8.11 Caenorhabditis elegans
WBGene00019920 acs-15 R07C3.4 Caenorhabditis elegans
WBGene00007454 C08F11.7 C08F11.7 Caenorhabditis elegans

1 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The whole period of embryogenesis in the nematode Caenorhabditis elegans, from the formation of an egg until hatching. embryo Ce WBls:0000003

0 Processes

5 Regulated By Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001943 his-69 E03A3.3 Caenorhabditis elegans
WBGene00001944 his-70 E03A3.4 Caenorhabditis elegans
WBGene00001945 his-71 F45E1.6 Caenorhabditis elegans
WBGene00001946 his-72 Y49E10.6 Caenorhabditis elegans
WBGene00012276 his-74 W05B10.1 Caenorhabditis elegans

0 Regulated By Molecule