WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  All available microarray datasets for the GPL200 platform (Affymetrix C. elegans Genome Array) were obtained from the GEO repository. This included 2243 individual microarray experiments. These were normalized against each other with the software RMAexpress (Bolstad, 2014). Based on these normalized values, Pearsons correlation coefficients were obtained for each probe-probe pair of the 22,620 probes represented on this array type. The resulting list of correlation coefficients was then ranked to generate the ranked coexpression database with information on each probe represented on the GPL200 platform. Description  Coexpression clique No. 60, 176662_at-Y53F4B.16, on the genome-wide coexpression clique map for the nematode GPL200 platform.
Primary Identifier  WBPaper00061527:176662_at-Y53F4B.16

0 Anatomy Terms

520 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000014 abf-3 F54B8.5 Caenorhabditis elegans
WBGene00000020 abt-2 F12B6.1 Caenorhabditis elegans
WBGene00000027 abu-4 Y5H2A.3 Caenorhabditis elegans
WBGene00000036 ace-2 Y44E3A.2 Caenorhabditis elegans
WBGene00000038 ace-4 Y48B6A.7 Caenorhabditis elegans
WBGene00000082 adt-1 C02B4.1 Caenorhabditis elegans
WBGene00000100 ajm-1 C25A11.4 Caenorhabditis elegans
WBGene00000108 alh-2 K04F1.15 Caenorhabditis elegans
WBGene00000140 anc-1 ZK973.6 Caenorhabditis elegans
WBGene00000408 cdk-7 Y39G10AL.3 Caenorhabditis elegans
WBGene00000432 ceh-7 C34C6.8 Caenorhabditis elegans
WBGene00000438 ceh-14 F46C8.5 Caenorhabditis elegans
WBGene00000497 chs-2 F48A11.1 Caenorhabditis elegans
WBGene00000518 ckk-1 C05H8.1 Caenorhabditis elegans
WBGene00000527 cle-1 C36B1.1 Caenorhabditis elegans
WBGene00000559 cnc-5 R09B5.10 Caenorhabditis elegans
WBGene00000679 col-105 F58F6.2 Caenorhabditis elegans
WBGene00000724 col-151 AC3.6 Caenorhabditis elegans
WBGene00000820 csp-2 Y73B6BL.7 Caenorhabditis elegans
WBGene00000821 csp-3 Y47H9C.6 Caenorhabditis elegans
WBGene00000908 daf-12 F11A1.3 Caenorhabditis elegans
WBGene00000950 deg-1 C47C12.6 Caenorhabditis elegans
WBGene00001148 eat-20 H30A04.1 Caenorhabditis elegans
WBGene00001179 egl-10 F28C1.2 Caenorhabditis elegans
WBGene00001194 egl-27 C04A2.3 Caenorhabditis elegans
WBGene00001207 egl-43 R53.3 Caenorhabditis elegans
WBGene00001492 frm-5.1 Y38C1AB.8 Caenorhabditis elegans
WBGene00001507 fut-4 K12H6.3 Caenorhabditis elegans
WBGene00001512 gab-1 ZC482.1 Caenorhabditis elegans
WBGene00001538 gcy-12 F08B1.2 Caenorhabditis elegans

0 Life Stages

0 Processes

0 Regulated By Gene

0 Regulated By Molecule